DeepMap MCP

What it does\nProvides LLMs with structured access to the Broad Institute's DepMap (Cancer Dependency Map) data. It acts as a low-latency bridge to perform functional genomics analysis across 1,000+ cancer cell lines, specifically optimized for therapeutic target evidence collection.\n\n## Tools\n- search_depmap_gene: Search for valid HGNC gene symbols within the dataset.\n- get_depmap_gene_dependency_summary: Retrieve global statistical metrics (average gene effect, confidence scores) for a specific gene.\n- get_depmap_top_cell_line_dependencies: Identify the cancer models most sensitive to the loss of a target gene.\n- get_depmap_dataset_metadata: Access provenance data about the local CRISPR cache.\n\n## Installation\nAdd the following to your claude_desktop_config.json:\n\njson\n{\n "mcpServers": {\n "deepmap-mcp": {\n "command": "deepmap-mcp",\n "args": ["--transport", "stdio"],\n "env": {\n "DEEPMAP_MCP_DATASET_PATH": "/YOUR/ABSOLUTE/PATH/TO/CRISPRGeneEffect.csv"\n }\n }\n }\n}\n\n\n## Supported hosts\nClaude Desktop