GeneMCP

Name: GeneMCP
Availability: InStock
Author: matthew-sayer

by matthew-sayer

Analyze genetics using DNA files and NVIDIA NIMs for medical-grade research and risk assessment.

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Works in:claude

Exposes:ToolsResources

View on GitHub Docs

What it does

GeneMCP connects LLMs to genomic data, allowing AI to analyze DNA files (.csv) and research genetic vulnerabilities. It leverages the NVIDIA NIM toolset to bridge the gap between raw genetic sequences and medical insights.

Tools

deep_genetic_research: Orchestrates a workflow using GWAS Catalogue and web search to investigate medical conditions.
assess_patient_genetic_risk_profile: Calculates Polygenic Risk Scores (PRS) for specific conditions based on a patient's DNA.
dna_generator: Uses NVIDIA Evo2-40B to generate novel DNA sequences for synthetic biology.
chat_with_model: Expert interface for discussing genetic findings using models like Palmyra-70b.

Installation

{
  "mcpServers": {
    "genemcp": {
      "command": "uv",
      "args": ["run", "fastapi", "dev", "main.py"],
      "env": {
        "NVIDIA_API_KEY": "your_key",
        "GOOGLE_SEARCH_API_KEY": "your_key",
        "GOOGLE_CUSTOM_SEARCH_CX": "your_cx"
      }
    }
  }
}