OakVar MCP
by miliyarsh
Genomic variant analysis interface for AI assistants, enabling annotation pipelines and database queries via OakVar.
What it does
OakVar MCP exposes the powerful genomic variant analysis capabilities of OakVar to AI assistants. It allows users to manage annotator modules, run complex annotation pipelines, and query genomic result databases using natural language.
Tools
oakvar_run: Execute the genomic annotation pipeline.oakvar_module_install: Install new genomic annotator modules.oakvar_query: Execute SQL queries against result databases.oakvar_report: Generate analysis reports in VCF, Excel, or CSV formats.oakvar_system_check: Verify the local OakVar installation status.
Installation
Add the following to your claude_desktop_config.json:
{
"mcpServers": {
"oakvar": {
"command": "oakvar-mcp"
}
}
}
Supported hosts
- Claude Desktop
- ChatGPT Desktop
Quick install
pip install oakvar oakvar-mcpInformation
- Pricing
- free
- Published
- 5/2/2026
- stars
- 0
Categories
Choose your AI client and follow the steps below.
ChatGPT
Add entry to chatgpt_mcp_config.jsonClaude Desktop
{"mcpServers": {"oakvar": {"command": "oakvar-mcp"}}}Related Apps
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