Zygomorphic

What it does

Zygomorphic provides a shared, undirected labeled graph memory where AI agents and humans can collaborate. It allows agents to navigate, annotate, and build structure in a knowledge graph rather than relying on simple retrieval, transforming the interaction into a live collaborative workspace.

Tools

• get_overview: Retrieves all nodes with their summaries.
• get_node: Fetches full content, edges, and exploration logs for a specific node.
• get_neighborhood: Performs a BFS traversal to depth N from any node.
• search: Keyword search across node content and summaries.
• create_node: Creates a new node, optionally connecting it to another.
• update_node: Updates the content and summary of an existing node.
• create_edge: Connects two nodes with a labeled edge.
• delete_edge: Removes an existing edge between nodes.
• add_comment: Leaves an ephemeral comment on a node.
• record_exploration: Logs that an agent visited a specific node.
• get_exploration_state: Reports visited nodes and conclusions reached.

Installation

{
  "mcpServers": {
    "zygomorphic": {
      "command": "npm",
      "args": ["start", "--prefix", "/path/to/zygomorphic"]
    }
  }
}

Supported hosts

• Claude Desktop