FHIR MCP Server

What it does

FHIR MCP Server facilitates seamless interaction between LLM-based agents and healthcare systems using the Fast Healthcare Interoperability Resources (FHIR) standard. It allows AI to perform full CRUD operations on clinical data, making it possible to query patient records, conditions, and medications using natural language.

Tools

• request_patient_resource: Manage patient demographics and administrative info.
• request_observation_resource: Handle clinical measurements and assessments.
• request_condition_resource: Manage patient problems and diagnoses.
• request_medication_resource: Handle medication information and orders.
• request_immunization_resource: Manage vaccination records.
• request_encounter_resource: Handle patient visits and interactions.
• request_allergy_intolerance_resource: Manage patient allergy information.
• request_family_member_history_resource: Handle family health history.
• request_generic_resource: Perform operations on any FHIR resource not covered by specific tools.
• add_document_to_pinecone: Ingests documents into a vector database for semantic search.
• search_pinecone: Performs semantic search across indexed documents.
• get_loinc_codes: Retrieves standardized LOINC codes for medical observations.

Installation

Add the following to your claude_desktop_config.json:

{
  "mcpServers": {
    "fhir-mcp-server": {
      "command": "docker",
      "args": [
        "run",
        "-i",
        "--rm",
        "--init",
        "--name",
        "fhir-mcp-server",
        "--mount",
        "type=bind,source=<your-project-path>/config/.env,target=/root_project/config/.env",
        "-e", "TRANSPORT_MODE=stdio",
        "mcp-server:latest"
      ]
    }
  }
}

Supported hosts

• Claude Desktop