MCP App StoreMCP App Store
from alterlab-academic-skills25
Guided hypothesis testing, assumption checking, and APA-formatted reporting.
A comprehensive suite for rigorous statistical testing and academic reporting. This skill guides the user through the entire analytical pipeline, from test selection to publication-ready reporting.
Core Features:
Workflow Integration:
Utilizes scipy.stats, statsmodels, and pingouin to deliver precise calculations with associated code examples for reproducibility.
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Mixed Methods Research Design
Comprehensive guide for designing and integrating qualitative and quantitative research approaches using established academic frameworks.
AlterLab Deep Research
A 13-agent, PRISMA-capable research pipeline that runs scoping, systematic literature search, verification, synthesis, meta-analysis, and APA‑style reporting fo
ClinVar Database (AlterLab)
Search and interpret NCBI ClinVar variant data, access via E-utilities or FTP, annotate VCFs, and incorporate review-status and evidence best practices for geno
AlterLab PyMC — Bayesian Modeling
Bayesian modeling workflow using PyMC (v5+): build hierarchical models, run MCMC (NUTS) or variational inference, diagnose sampling, and compare models with LOO
bioRxiv Database Search
Search and retrieve life-sciences preprints from bioRxiv via API.
GeoPandas Geospatial Analysis
Advanced spatial analysis for vector data including coordinate reprojection, spatial joins, and choropleth mapping using the GeoPandas library.
DepMap Cancer Dependency Analysis
Query the Cancer Dependency Map (DepMap) for gene dependency scores, drug sensitivity, and cancer-specific genetic vulnerabilities.
arxiv2md
Convert arXiv papers into clean, LLM-ready Markdown via a REST API or CLI for fast reading, summarization, and downstream processing.
Scite Database (Smart Citations)
Query Scite.ai Smart Citations by DOI to report supporting, contrasting, and mentioning citation counts and help assess a paper's reliability.
Writing Implementation Plans
Generate detailed, engineer-ready implementation plans from design docs: file paths, step-by-step tasks, tests, and verification instructions.
NotebookLM Research Agent
End-to-end research-to-content pipeline: ingest sources into Google NotebookLM, run deep cited research, generate downloadable artifacts, and produce polished c
AI News Daily
Generate a structured, bilingual daily briefing of the latest AI industry news, model updates, papers, and open-source tools with in-depth technical analysis an
ToolUniverse Gateway
Unified agent gateway to 1000+ scientific tools (bioinformatics, drug discovery, genomics) via Harvard's ToolUniverse, returning JSON for downstream workflows.
Research Information Lookup
Find and synthesize current research and academic papers with automatic backend routing (Parallel Chat API or Perplexity) and structured citations.
arXiv Paper Search & Download
Search arXiv, fetch paper metadata, download PDFs, and produce concise summaries for academic papers (ID or query).