from openclaw-medical-skills2,096
Sequence data QC, trimming, alignment, and BAM processing pipeline helper — wraps FastQC, fastp/Trimmomatic, BWA/Bowtie2/Minimap2, and SAMtools for automated re
Seq Wrangler is a domain-specific skill that equips an agent to perform sequence data quality control, adapter trimming, alignment to reference genomes, BAM processing (sort, index, mark duplicates), coverage stats, and MultiQC aggregation. It also helps export full pipelines as shell scripts or Nextflow workflows.
Use this skill when processing NGS FASTQ data: running FastQC, trimming adapters, aligning reads with BWA/Bowtie2/Minimap2, and producing analysis-ready BAMs with SAMtools/picard. It's intended for bioinformatics pipelines and labs that need reproducible, automated sequence-processing steps.
Best for agents with shell access and bioinformatics toolchains available (Linux/macos agents with samtools, bwa/bowtie2/minimap2).
Seq Wrangler is a planned (not yet implemented) skill for bioinformatics sequence data QC, trimming, alignment, and BAM processing. It wraps standard tools like FastQC, BWA, Bowtie2, Minimap2, and SAMtools. The SKILL.md is well-structured but purely aspirational — marked as 'Planned' targeting Week 4-5. No scripts exist to test. Security is clean with no concerning patterns.
Planned skill with good documentation structure but zero implementation. Useful concept for bioinformatics audience but currently non-functional.
