Agent Skills

KEGG Pathway Enrichment (clusterProfiler)

bioskills

Run KEGG pathway and module enrichment using clusterProfiler (enrichKEGG/enrichMKEGG) to find metabolic and signaling pathways over-represented in a gene list.

Network Toxicology & Docking Research Planner

skills

Generates four-tier network toxicology + molecular docking study designs (Lite → Publication+) with step-by-step workflows, validation strategies, figure plans,

Bizard — Biomedical Visualization Atlas

Bizard

A comprehensive atlas of biomedical data visualization tutorials and examples (R/Python/Julia) that provides reproducible code and guidance for plots used in bi

ToolUniverse Gateway

scienceclaw

Unified agent gateway to 1000+ scientific tools (bioinformatics, drug discovery, genomics) via Harvard's ToolUniverse, returning JSON for downstream workflows.

MatchMS (mass spectrometry processing)

kosmos

Mass spectrometry data processing: import/export mzML/MGF/MSP, filter and normalize spectra, compute spectral similarity (cosine/modified cosine), and build rep

Proteomics Differential Expression

clawbio

Runs differential expression analysis on label-free quantitative proteomics (MaxQuant, DIA-NN) including preprocessing, imputation, statistical testing, and vis

Bismark Methylation Calling

openclaw-medical-skills

Extract per-cytosine methylation calls (CpG/CHG/CHH) from Bismark-aligned BAMs and produce bedGraph/coverage reports for downstream analysis.

E.Copi — Scientific Multi-Agent System

internta

Multi-expert scientific agent for drug discovery and biomedical research that instantiates domain specialists, integrates multimodal evidence, and generates ana

Seq Wrangler

openclaw-medical-skills

Sequence data QC, trimming, alignment, and BAM processing pipeline helper — wraps FastQC, fastp/Trimmomatic, BWA/Bowtie2/Minimap2, and SAMtools for automated re

ScRep Combining Expression

immunopipe

Integrate scTCR/BCR repertoire data into a Seurat scRNA-seq object using scRepertoire::combineExpression to enable clonotype-aware expression analysis and visua

BioMCP

biomcp

CLI-first toolkit to discover and retrieve biomedical entities (genes, variants, drugs, trials, diagnostics, articles) and run structured literature and data wo

ClinVar Database (AlterLab)

alterlab-academic-skills

Search and interpret NCBI ClinVar variant data, access via E-utilities or FTP, annotate VCFs, and incorporate review-status and evidence best practices for geno