MCP App StoreMCP App StoreSKILL.md packages that extend Claude Code, Cursor, Copilot, and other AI agents.
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alterlab-academic-skills
Search and interpret NCBI ClinVar variant data, access via E-utilities or FTP, annotate VCFs, and incorporate review-status and evidence best practices for geno
bioskills
Run KEGG pathway and module enrichment using clusterProfiler (enrichKEGG/enrichMKEGG) to find metabolic and signaling pathways over-represented in a gene list.
skills
Generates four-tier network toxicology + molecular docking study designs (Lite → Publication+) with step-by-step workflows, validation strategies, figure plans,
biomcp
CLI-first toolkit to discover and retrieve biomedical entities (genes, variants, drugs, trials, diagnostics, articles) and run structured literature and data wo
scienceclaw
Unified agent gateway to 1000+ scientific tools (bioinformatics, drug discovery, genomics) via Harvard's ToolUniverse, returning JSON for downstream workflows.
awesome-bio-agent-skills
Search arXiv for recent preprints and build local Markdown summaries; ideal for CS, math, physics, and quantitative-bio literature discovery.
kosmos
Mass spectrometry data processing: import/export mzML/MGF/MSP, filter and normalize spectra, compute spectral similarity (cosine/modified cosine), and build rep
Bizard
A comprehensive atlas of biomedical data visualization tutorials and examples (R/Python/Julia) that provides reproducible code and guidance for plots used in bi
openclaw-medical-skills
Extract per-cytosine methylation calls (CpG/CHG/CHH) from Bismark-aligned BAMs and produce bedGraph/coverage reports for downstream analysis.
clawbio
Runs differential expression analysis on label-free quantitative proteomics (MaxQuant, DIA-NN) including preprocessing, imputation, statistical testing, and vis
internta
Multi-expert scientific agent for drug discovery and biomedical research that instantiates domain specialists, integrates multimodal evidence, and generates ana
immunopipe
Integrate scTCR/BCR repertoire data into a Seurat scRNA-seq object using scRepertoire::combineExpression to enable clonotype-aware expression analysis and visua
openclaw-medical-skills
Sequence data QC, trimming, alignment, and BAM processing pipeline helper — wraps FastQC, fastp/Trimmomatic, BWA/Bowtie2/Minimap2, and SAMtools for automated re
awesome-bio-agent-skills
Query the AlphaFold EBI API to fetch predicted protein structures, download PDB/CIF files, and inspect confidence metrics (pLDDT/PAE).
awesome-bio-agent-skills
Run DnaSP-style population genetics analyses (π, Tajima's D, LD, MK, Ka/Ks, SFS) on aligned sequences locally and produce TSV/Markdown reports.
awesome-omni-skill
High-performance genomic data processing using polars-bio and Polars: streaming VCF/FASTA/ BED handling, interval joins, variant annotation, and Parquet convers
claude-code-templates
Query the NHGRI-EBI GWAS Catalog for SNP-trait associations, variant lookups, trait searches, and summary statistics for genetic epidemiology and PRS work.
alterlab-academic-skills
Search and retrieve life-sciences preprints from bioRxiv via API.
auto-college
Build and analyze evolutionary trees using MAFFT, IQ-TREE 2, and FastTree with ETE3 visualization.
alterlab-academic-skills
Query the Cancer Dependency Map (DepMap) for gene dependency scores, drug sensitivity, and cancer-specific genetic vulnerabilities.
Bioclaw Skills Hub
Complete shotgun metagenomics workflow including host-depletion QC, taxonomic profiling, functional analysis, and AMR summaries.
immunopipe
Isolates T and B cells from mixed cell populations using VDJ data, marker genes, or k-means clustering.
LunarTech-X Superpowers
Programmatic access to the Catalogue of Somatic Mutations in Cancer (COSMIC) for cancer genomics and precision oncology research.
operon
Comprehensive QC for flow, spectral, and mass cytometry to remove acquisition artifacts and flag outlier samples.
awesome-bio-agent-skills
End-to-end pipeline for short-read bulk RNA-seq alternative splicing analysis: QC, STAR 2-pass alignment, junction QC, rMATS differential splicing, isoform swit
claude-code-templates
Access the BRENDA enzyme database via SOAP API to retrieve kinetic parameters, reactions, organism data, and substrate-specific enzyme information.
claude-code-templates
Query ChEMBL programmatically to retrieve bioactive molecule data, bioactivity measurements, targets, and perform similarity/substructure searches for drug disc
bioskills
Detect syntenic gene blocks and structural rearrangements between genomes using MCScanX, JCVI, GENESPACE, SyRI, AnchorWave and related tools; guidance on pipeli
operon
Analyze, filter, and trim FASTQ sequence read quality scores using Biopython to ensure high-quality genomic data.
kosmos
Access and query the Ensembl REST API for gene lookups, sequence retrieval, variant annotation (VEP), orthologs, and comparative genomics across 250+ species.