MCP App StoreMCP App StoreSKILL.md packages that extend Claude Code, Cursor, Copilot, and other AI agents.
Tags
bioskills
Detect syntenic gene blocks and structural rearrangements between genomes using MCScanX, JCVI, GENESPACE, SyRI, AnchorWave and related tools; guidance on pipeli
alterlab-academic-skills
Search and interpret NCBI ClinVar variant data, access via E-utilities or FTP, annotate VCFs, and incorporate review-status and evidence best practices for geno
bioskills
Run KEGG pathway and module enrichment using clusterProfiler (enrichKEGG/enrichMKEGG) to find metabolic and signaling pathways over-represented in a gene list.
skills
Generates four-tier network toxicology + molecular docking study designs (Lite → Publication+) with step-by-step workflows, validation strategies, figure plans,
claude-code-templates
Query ChEMBL programmatically to retrieve bioactive molecule data, bioactivity measurements, targets, and perform similarity/substructure searches for drug disc
kosmos
Access and query the Ensembl REST API for gene lookups, sequence retrieval, variant annotation (VEP), orthologs, and comparative genomics across 250+ species.
biomcp
CLI-first toolkit to discover and retrieve biomedical entities (genes, variants, drugs, trials, diagnostics, articles) and run structured literature and data wo
Bizard
A comprehensive atlas of biomedical data visualization tutorials and examples (R/Python/Julia) that provides reproducible code and guidance for plots used in bi
awesome-bio-agent-skills
Search arXiv for recent preprints and build local Markdown summaries; ideal for CS, math, physics, and quantitative-bio literature discovery.
kosmos
Mass spectrometry data processing: import/export mzML/MGF/MSP, filter and normalize spectra, compute spectral similarity (cosine/modified cosine), and build rep
scienceclaw
Unified agent gateway to 1000+ scientific tools (bioinformatics, drug discovery, genomics) via Harvard's ToolUniverse, returning JSON for downstream workflows.
openclaw-medical-skills
Extract per-cytosine methylation calls (CpG/CHG/CHH) from Bismark-aligned BAMs and produce bedGraph/coverage reports for downstream analysis.
awesome-bio-agent-skills
End-to-end pipeline for short-read bulk RNA-seq alternative splicing analysis: QC, STAR 2-pass alignment, junction QC, rMATS differential splicing, isoform swit
clawbio
Runs differential expression analysis on label-free quantitative proteomics (MaxQuant, DIA-NN) including preprocessing, imputation, statistical testing, and vis
awesome-skills-cn
Query gnomAD for population allele frequencies, variant consequence annotations, and gene constraint scores to support variant interpretation and population gen
internta
Multi-expert scientific agent for drug discovery and biomedical research that instantiates domain specialists, integrates multimodal evidence, and generates ana
immunopipe
Integrate scTCR/BCR repertoire data into a Seurat scRNA-seq object using scRepertoire::combineExpression to enable clonotype-aware expression analysis and visua
scp
Validate protein sequences, compute biochemical properties, predict 3D structure (ESMFold), and analyze binding pockets — end-to-end protein characterization.
openclaw-medical-skills
Sequence data QC, trimming, alignment, and BAM processing pipeline helper — wraps FastQC, fastp/Trimmomatic, BWA/Bowtie2/Minimap2, and SAMtools for automated re
claude-code-templates
Access the BRENDA enzyme database via SOAP API to retrieve kinetic parameters, reactions, organism data, and substrate-specific enzyme information.
asb-skill-collections
Transform and collate tabular records into structured JSON dictionaries using field mapping, filtering, and grouping for scientific metadata.
asb-skill-collections
Extract and deconvolve individual fragmentation spectra from composite mass spectrometry data for metabolomics and exposomics annotation.
asb-skill-collections
Automates the export of LC-MS metabolomics quality control results into publication-ready plots, HTML reports, and data tables.
asb-skill-collections
Validate Orbitrap mass spectrometry data by verifying instrument metadata and quantifying fragment ion signal-to-noise ratios.
asb-skill-collections
Fetch, extract, and standardize GNPS molecular networking job archives for NPLinker integration.
asb-skill-collections
Replace zero and missing values in LC-MS metabolomics feature tables using minimum-value-based interpolation.
asb-skill-collections
Resolves metabolic gaps in individual consensus reconstructions by leveraging shared context across multi-member microbial or plant communities.
asb-skill-collections
Coordinate complex bioinformatics pipelines across HPC and cloud environments with reproducible, containerized task graphs.
claude-skill-registry
Predict metagenome functional content and infer KEGG, MetaCyc, and EC abundances from 16S rRNA marker gene data.
operon
Comprehensive QC for flow, spectral, and mass cytometry to remove acquisition artifacts and flag outlier samples.