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Build and analyze evolutionary trees using MAFFT, IQ-TREE 2, and FastTree with ETE3 visualization.
This skill provides a comprehensive pipeline for reconstructing the evolutionary history of biological sequences. It enables agents to perform multiple sequence alignment, infer phylogenetic trees using maximum likelihood or approximate methods, and visualize the resulting trees.
Use this skill for tasks involving:
Designed for agents with Python execution capabilities and access to bioinformatics CLI tools (via Conda/Pip), such as Codex, Claude Code, or custom AI research agents.
This skill has not been reviewed by our automated audit pipeline yet.
Extract Circuit Netlist Edge Features
Extract structured edge features from a bipartite circuit netlist (NetworkX MultiGraph), normalizing device/net ordering, mapping terminal colors, and detecting
Seq Wrangler
Sequence data QC, trimming, alignment, and BAM processing pipeline helper — wraps FastQC, fastp/Trimmomatic, BWA/Bowtie2/Minimap2, and SAMtools for automated re
Markdrop
Convert PDFs to structured Markdown or interactive HTML and generate AI-powered descriptions for images and tables using multiple LLM providers.
FastAPI Project Templates
Creates production-ready FastAPI project scaffolds with async patterns, DI, middleware, and testing best practices for high-performance APIs.
Unitree Robot Controller
Control and command Unitree robots (GO1/GO2/G1/H1) via OpenClaw: initialization, basic motion commands, and sensor integrations.
Alpha Forge Pre-Ship Quality Gates
Pre-merge quality gates for PRs that validate RNG determinism, forked URLs, runtime parameter ranges, and manifest synchronization to reduce review cycles.
Plotly (Interactive Python Visualizations)
Interactive Python visualization skill for building hoverable, zoomable, and embeddable charts (Plotly Express + Graph Objects) for EDA, dashboards, and present
Dr. Manhattan - Prediction Market Trading
Unified CCXT-style API and tools for discovering, analyzing, and trading prediction markets across Polymarket, Kalshi, Opinion, Limitless, and Predict.fun; incl