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Run DnaSP-style population genetics analyses (π, Tajima's D, LD, MK, Ka/Ks, SFS) on aligned sequences locally and produce TSV/Markdown reports.
DnaSP reimplements the DnaSP 6 analysis suite as a ClawBio skill: it constructs and runs population genetics analyses (polymorphism, neutrality tests, LD, recombination, divergence, MK, Ka/Ks, codon usage, SFS) from FASTA/NEXUS inputs and emits reproducible TSV and Markdown reports and figures. The heavy computation runs in the included Python scripts; the agent interprets results and explains their meaning.
Use this skill when you need population genetics summary statistics or tests on aligned sequence data — e.g. nucleotide diversity, Tajima's D, LD measures, recombination Rm, divergence (Dxy/Da), McDonald–Kreitman tests, Ka/Ks, or codon usage metrics. Not for phylogenetic tree building or VCF annotation.
Works with agents that can run local Python scripts and present tabular/figure outputs. The agent should not invent statistics — it must trust and explain dnasp.py outputs.
This skill has not been reviewed by our automated audit pipeline yet.
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