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Query the AlphaFold EBI API to fetch predicted protein structures, download PDB/CIF files, and inspect confidence metrics (pLDDT/PAE).
This skill lets an agent fetch predicted protein structures from the AlphaFold EBI API, download structure files (PDB/CIF), and surface per-residue confidence metrics such as pLDDT and PAE images. It includes example code snippets showing how to request prediction metadata, retrieve download URLs, and write structure files to disk. The examples are practical for rapid analysis or integration into downstream structure analysis pipelines.
Use this skill when a user asks about a specific protein's 3D structure, wants to compare predicted models to experimental PDB entries, requests per-residue confidence scores, or needs downloadable structure files for visualization or further processing. Trigger phrases include protein name or UniProt accession, "AlphaFold", "pLDDT", "structure prediction", "download PDB", or "CIF file".
This skill is platform-agnostic (HTTP API calls). It is best used by agents that can run short Python snippets or perform HTTP requests (Claude Code, Copilot/Code assistants, or any agent with external request capability).
This skill has not been reviewed by our automated audit pipeline yet.
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