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from immunopipe21
Isolates T and B cells from mixed cell populations using VDJ data, marker genes, or k-means clustering.
This skill provides a robust methodology for separating T and B cells from a mixed cell population in single-cell RNA-seq and VDJ-seq datasets. It allows for high-precision isolation of relevant cells before proceeding to TCR or BCR specific analysis.
Use this skill when your dataset contains mixed cell types and you need to identify which clusters are specifically T or B cells. It is particularly useful after initial Seurat clustering but before deep immune repertoire analysis.
Designed for agents capable of managing R-based bioinformatics pipelines, specifically those integrated with the immunopipe framework.
This skill has not been reviewed by our automated audit pipeline yet.
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