MCP App StoreMCP App Store
from claude-code-templates27,800
Query ChEMBL programmatically to retrieve bioactive molecule data, bioactivity measurements, targets, and perform similarity/substructure searches for drug disc
A skill that surfaces programmatic access patterns to the ChEMBL bioactivity database via the official Python client. Useful for medicinal chemistry, target/ligand lookups, activity extraction (IC50, Ki, EC50), SAR analysis, and structure-based searches.
find potent inhibitors for EGFR → returns candidate molecule IDs and bioactivity recordssimilarity search for SMILES ... → returns similar compounds and their activitiesThis skill has not been reviewed by our automated audit pipeline yet.
Scientific Schematics & Diagrams
Generate publication-quality scientific diagrams via AI with iterative quality review and smart regeneration for journal, conference, poster, and presentation o
Writing Hookify Rules
Guides creating Hookify rule files (.claude/hookify.*.local.md) to detect patterns (dangerous commands, secrets, debug logs) and show warnings or block actions.
BRENDA Database Client
Access the BRENDA enzyme database via SOAP API to retrieve kinetic parameters, reactions, organism data, and substrate-specific enzyme information.
Hook Development for Claude Code Plugins
Guidance and patterns for creating event-driven hooks (PreToolUse, PostToolUse, Stop, SessionStart, etc.) for Claude Code plugins and projects.
Coding Standards & Best Practices
Opinionated, language-agnostic coding standards and best practices focused on TypeScript/JavaScript/React to improve readability, safety, and maintainability.
Seq Wrangler
Sequence data QC, trimming, alignment, and BAM processing pipeline helper — wraps FastQC, fastp/Trimmomatic, BWA/Bowtie2/Minimap2, and SAMtools for automated re
ToolUniverse Gateway
Unified agent gateway to 1000+ scientific tools (bioinformatics, drug discovery, genomics) via Harvard's ToolUniverse, returning JSON for downstream workflows.
MatchMS (mass spectrometry processing)
Mass spectrometry data processing: import/export mzML/MGF/MSP, filter and normalize spectra, compute spectral similarity (cosine/modified cosine), and build rep
KEGG Pathway Enrichment (clusterProfiler)
Run KEGG pathway and module enrichment using clusterProfiler (enrichKEGG/enrichMKEGG) to find metabolic and signaling pathways over-represented in a gene list.
Network Toxicology & Docking Research Planner
Generates four-tier network toxicology + molecular docking study designs (Lite → Publication+) with step-by-step workflows, validation strategies, figure plans,
Bizard — Biomedical Visualization Atlas
A comprehensive atlas of biomedical data visualization tutorials and examples (R/Python/Julia) that provides reproducible code and guidance for plots used in bi
Bismark Methylation Calling
Extract per-cytosine methylation calls (CpG/CHG/CHH) from Bismark-aligned BAMs and produce bedGraph/coverage reports for downstream analysis.
E.Copi — Scientific Multi-Agent System
Multi-expert scientific agent for drug discovery and biomedical research that instantiates domain specialists, integrates multimodal evidence, and generates ana