MCP App StoreMCP App StoreThis skill documents and automates best-practice workflows for preprocessing untargeted mass-spectrometry data with MS-DIAL. It explains headless (console) runs for DDA/DIA and GC-EI, shows how to convert outputs into feature metadata + intensity matrices, and recommends honest filtering (Fill%, MS/MS support, QC thresholds). Use it when you need reproducible batch preprocessing that produces an analysis-ready table for downstream statistics or annotation.
MsdialConsoleApp and R/Python import snippets are provided in the SKILL.md body.skiprows=4 parsing, and honest filtering rules.This content is authoring-agnostic; it is useful to Claude Code / Copilot-style agents that can run shell commands and stitch R/Python examples into workflows.
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