MCP App StoreMCP App StoreSKILL.md packages that extend Claude Code, Cursor, Copilot, and other AI agents.
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alterlab-academic-skills
Search and interpret NCBI ClinVar variant data, access via E-utilities or FTP, annotate VCFs, and incorporate review-status and evidence best practices for geno
biomcp
CLI-first toolkit to discover and retrieve biomedical entities (genes, variants, drugs, trials, diagnostics, articles) and run structured literature and data wo
scienceclaw
Unified agent gateway to 1000+ scientific tools (bioinformatics, drug discovery, genomics) via Harvard's ToolUniverse, returning JSON for downstream workflows.
awesome-bio-agent-skills
End-to-end pipeline for short-read bulk RNA-seq alternative splicing analysis: QC, STAR 2-pass alignment, junction QC, rMATS differential splicing, isoform swit
openclaw-medical-skills
Extract per-cytosine methylation calls (CpG/CHG/CHH) from Bismark-aligned BAMs and produce bedGraph/coverage reports for downstream analysis.
openclaw-medical-skills
Call topologically associating domains (TADs) from Hi-C contact matrices using insulation scores and HiCExplorer; outputs boundaries and TAD intervals for downs
awesome-bio-agent-skills
Commands and examples for converting genotype formats and running standard QC filters (MAF, geno, mind, HWE) with PLINK 1.9/2.0.
Awesome Omni Skill
High-performance genomic data processing using polars-bio and Polars: streaming VCF/FASTA/ BED handling, interval joins, variant annotation, and Parquet convers
claude-code-templates
Query the NHGRI-EBI GWAS Catalog for SNP-trait associations, variant lookups, trait searches, and summary statistics for genetic epidemiology and PRS work.
auto-college
Build and analyze evolutionary trees using MAFFT, IQ-TREE 2, and FastTree with ETE3 visualization.
alterlab-academic-skills
Query the Cancer Dependency Map (DepMap) for gene dependency scores, drug sensitivity, and cancer-specific genetic vulnerabilities.
Bioclaw Skills Hub
Complete shotgun metagenomics workflow including host-depletion QC, taxonomic profiling, functional analysis, and AMR summaries.
LunarTech-X Superpowers
Programmatic access to the Catalogue of Somatic Mutations in Cancer (COSMIC) for cancer genomics and precision oncology research.
bioskills
Detect syntenic gene blocks and structural rearrangements between genomes using MCScanX, JCVI, GENESPACE, SyRI, AnchorWave and related tools; guidance on pipeli
operon
Analyze, filter, and trim FASTQ sequence read quality scores using Biopython to ensure high-quality genomic data.
kosmos
Access and query the Ensembl REST API for gene lookups, sequence retrieval, variant annotation (VEP), orthologs, and comparative genomics across 250+ species.
omicsclaw
Summarise structural variants from an SV VCF: per-type counts, size classification, and basic BND handling for DEL/DUP/INV/TRA/INS.